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    Home ▸ Vegan Desserts

    Vegan Lemon Poppy Seed Muffins (Gluten Free)

    Last modified: April 29, 2024. Originally posted: April 29, 2024 By Sophia DeSantis

    This post may contain paid links. As an Amazon Associate I earn from qualifying purchases.
    Jump to Recipe Print Recipe
    Collage of lemon poppy seed muffin batter, baked muffins that were just glazed and a muffin with a bite out of it with overlay text.
    A lemon poppy seed muffin in a liner with a bite out of it sitting on a yellow surface in front of other muffins.

    Vegan lemon poppy seed muffins made with gluten free ingredients without compromising on taste or texture. Moist and citrusy with a touch of sweet!

    The texture of these muffins is perfection. It's amazing that they use 10 simple ingredients. These will quickly become a family favorite!

    A group of lemon poppy seed muffins in front of lemons and one with a bite out of it in the front.

    This post was sponsored by Rubbermaid but the content and opinions expressed are fully my own.

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    We love all types of muffins especially those made with fruit like vegan apple cinnamon muffins and vegan banana bread muffins. Adding lemon poppy seed into the mix will get us muffins all year long!

    Ingredients

    Making vegan lemon poppy seed muffins also gluten free is not easy, but I was able to conquer the perfect texture and flavor without eggs, butter or oil!

    Once they're baked I keep them sealed in my Rubbermaid storage containers with the EasyFindLids System™ to maintain that perfect taste and texture.

    Here is what I use for the muffins:

    Dry ingredients-

    • Oat flour - double check it's gluten free if needed
    • Fine grain almond flour 
    • Cane sugar 
    • Vanilla extract
    • Baking powder 
    • Sea salt
    • Poppyseeds

    This gluten-free flour mix is what I used for the best texture. I have not tried subbing with another ready mix.

    Wet ingredients-

    • Light coconut milk or other non-dairy milk
    • Lemon juice
    • Unsweetened apple sauce
    • Lemon zest

    Dress up your lemon and poppy seed muffins with an optional lemon glaze made with:

    • Powdered sugar
    • Lemon juice
    Top view of ingredients needed to make lemon poppy seed muffins, some in colored bowls and some right on the yellow surface.

    How to Make Vegan Lemon Poppy Seed Muffins

    You're going to love this vegan muffin recipe, it'll quickly become your go to! They have the best lemon flavor, take about 10 minutes of prep and 30 minutes to bake to sweet perfection:

    1. Mix all dry ingredients, except for the poppy seeds, in a large mixing bowl.
    2. Whisk in the coconut milk, lemon juice and apple sauce.
    3. Fold in the lemon zest and poppyseeds.
    4. Fill prepared muffin tins lined with baking cups.
    5. Bake, then let cool on a cooling rack.
    6. Drizzle with the icing if using and serve!
    A whisk mixing flours in a glass bowl sitting on a yellow surface.
    A whisk in a glass bowl filled with tan colored batter on a yellow surface.
    Top view of a glass bowl with batter topped with lemon zest and poppyseeds.
    Top view of lemon poppy seed muffin batter in a muffin tin sitting on a yellow surface.
    Top view of baked lemon poppy seed muffins in a muffin tin on a yellow surface.
    A glass jar with some white glaze and a half lemon next to it in front of a group of muffins.
    A group of lemon poppy seed muffins without glaze surrounding a glass jar with white glaze in it.
    A glass jar of white glaze next to lemon poppy seed muffins that have just been glazed.

    NOTE: You can print the FULL recipe with all ingredients & detailed instructions below!

    Flavor Variations

    Customize these lemon and poppy seed muffins each time you make them with a variety of flavors. Mix any of these into the batter, or use as a topping. The lemon blueberry muffins were my fave combo!

    Be aware that adding frozen fruit will add extra moisture to the batter and can effect the end result, and may need longer to bake.

    • Blueberries
    • Raspberries
    • Shredded coconut
    • Chia seeds
    • Slivered almonds
    • Fresh mint or basil
    • Or make these lemon poppyseed cupcakes by adding frosting!
    A hand grabbing a lemon poppy seed muffin that has a bite out of it next to other muffins.

    Make Ahead and Storage Tips

    Keep these vegan and gluten-free lemon poppyseed muffins as fresh as possible! Rubbermaid's EasyFindLids System™ has a variety of sizes to store your prepped ingredients and finished muffins.

    • Prep the components up to 3 days ahead of time:
      • Mix the dry ingredients in advance and store in an airtight container.
      • In a separate storage container combine the dairy free milk, apple sauce, and lemon juice. Keep in the fridge.
      • Make the icing if using, refrigerate until baking.
    • Or make the muffin batter up to 24 hours ahead of time.
      • Combine everything and store in an airtight container in the refrigerator.
      • Give a quick stir just before pouring into the muffin tins and baking.
    • Once baked, seal the lemon poppy seed muffins in an airtight container at room temperature.
      • They'll be best the first 2 days, but will keep for up to 5.
    • Freeze the muffins for later!
      • Seal in an airtight container and store in the freezer for up to 3 months.
    A plastic container filled with lemons and a half lemon in front of it with more containers in the background.
    A plastic container filled with lemon poppy seed muffins and one with a bite out of it sitting in front.

    The Best Storage Containers

    My top choice for keeping these vegan lemon muffins perfectly fresh is the Rubbermaid EasyFindLids containers. Here's why:

    • They're super cute! Which means I can take these muffins along to parties or give as a gift and the container doubles as a serving platter.
    • The EasyFindLids System™ has lids that match multiple bases and eliminates that annoying search for a matching lid.
    • They nest beautifully in my cabinets keeping them nice and organized, and once filled they stack perfectly!
    • Freezer safe means these muffins have a home for months!
    • Dishwasher safe because who wants to do extra dishes by hand?

    Preparation Tips

    In order to get the best success with this lemon poppy seed muffin recipe make sure to follow these tips:

    • Use foil baking cups in the muffin pan as they don’t stick like paper does.
    • To ensure the vegan lemon muffins rise evenly, smooth the batter down on the top using a moistened finger.
    • The baking time may vary by a minute or two.
      • Start checking them at 20 minutes and take out when a toothpick comes out clean and the tops just begin to get firm.
    • Let the poppy seed muffins cool in the tins until they are cool to the touch, then transfer to baking racks until completely cool, about an hour.
    • For the best texture you need accuracy with the flours. Which is why I include precise weights. If you don’t have a scale, then you can purchase this fairly inexpensive one.
    • If you prefer to measure, then measure the flours by scooping your measuring cup into the flour versus spooning it into it. This is how I measured when getting my weights.
    • I trialed these with many different sugars and cane sugar gave the best flavor. You can use coconut sugar but it will give you a deeper flavor that won’t be as sweet.

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    A bite out of a lemon poppy seed muffin sitting in an open muffin liner next to other muffins.

    Vegan Lemon Poppy Seed Muffins (Gluten Free)

    Sophia DeSantis
    Vegan lemon poppy seed muffins made with gluten free ingredients without compromising on taste or texture. Moist and citrusy with a touch of sweet!
    No ratings yet
    Print Recipe Pin Recipe Shop Ingredients
    Prep Time 10 minutes mins
    Cook Time 25 minutes mins
    Total Time 35 minutes mins
    Course Breakfast, Dessert, Snack
    Cuisine American
    Servings 12
    Calories 254 kcal

    Ingredients
     
     

    • 2 cups oat flour , gluten free if needed
    • ¾ cup fine grain almond flour
    • 1 ¼ cup cane sugar , see note
    • 1 tablespoon baking powder
    • ½ teaspoon sea salt
    • ¾ cup light coconut milk
    • ¾ cup lemon juice
    • ½ cup unsweetened apple sauce
    • 1 tablespoon vanilla extract
    • ¼ cup poppyseeds
    • 2 tablespoons lemon zest

    Icing (optional):

    • ½ cup powdered sugar
    • 1 tablespoon lemon juice
    Shop Ingredients on Jupiter

    Instructions
     

    • Preheat oven to 350 F/ 120 C.
    • Put flours, sugar, baking powder, into a medium bowl. Whisk to mix and break up any clumps.
    • Make a little well in the middle and add in the coconut milk, lemon juice and apple sauce.
    • Whisk again to combine and get a smooth batter.
    • Fold in the lemon zest and poppyseeds
    • Fill 12 muffin tins lined with baking cups or prepare the muffin tins with butter or oil. I use foil baking cups as they don’t stick like paper does. I also smoothed the batter down on the top by using a moistened finger, this helps them rise evenly as they bake.
    • Bake at 350 for 23-25 minutes. Depending on your oven, your baking time may vary by a minute or two. Start checking them at 20 minutes and take out when a toothpick comes out clean and the tops just begin to get firm.
    • Let cool in the muffin tins. Once cool to the touch, remove and continue cooling on baking racks until completely cool, about an hour.
    • Once cooled you can top with the icing if you choose to use it and serve.

    Notes

    • I trialed these with many different sugars and cane sugar gave the best flavor. You can use coconut sugar but it will give you a deeper flavor that won’t be as sweet.

    Recipe by Veggies Don’t Bite, visit our site for more great plant-based recipes.

    Nutrition

    Calories: 254kcalCarbohydrates: 44gProtein: 5gFat: 7gSaturated Fat: 2gPolyunsaturated Fat: 1gMonounsaturated Fat: 1gSodium: 103mgPotassium: 218mgFiber: 3gSugar: 28gVitamin A: 4IUVitamin C: 8mgCalcium: 102mgIron: 1mg

    Nutrition and metric information should be considered an estimate.

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    1. Steffanie

      May 30, 2023 at 3:37 pm

      You said you tried the recipe with many different sugars. Did you try it with maple syrup, and if so, what was the outcome? (I just don't do cane sugar)
      Thanksa

      Reply
      • Sophia DeSantis

        May 30, 2023 at 6:51 pm

        Hi Steffanie! Maple syrup, or other wet sweeteners, would totally change this recipe unfortunately. The texture was best using a dry sweetener. You can try maple sugar!

        Reply

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